Glyma17g36960 - SoyBase

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Report for Sequence Feature Glyma17g36960

Feature Type:	gene_model
Chromosome:	Gm17
Start:	40871884
stop:	40874387
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g36960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36550	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr4:17245400-17247926 REVERSE LENGTH=718	SoyBase	E_val: 2.00E-30	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005871	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: kinesin complex	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0019894	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinesin binding	SoyBase	N/A	ISS
UniRef100_B9R7V9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Spotted leaf protein, putative n=1 Tax=Ricinus communis RepID=B9R7V9_RICCO	SoyBase	E_val: 4.00E-44	ISS
UniRef100_UPI000233E931	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E931 related cluster n=1 Tax=unknown RepID=UPI000233E931	SoyBase	E_val: 4.00E-180	ISS

Expression Patterns of Glyma17g36960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g36960

Paralog	Evidence	Comments
Glyma14g08050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g36960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g251200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g36960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g36960

Limit To All Plant Sequences

>Glyma17g36960.2   sequence type=transcript   gene model=Glyma17g36960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGATATGGTCAGTCAGTAGGAAAAGCTTTGGAAACTACCCTTGTCATAAGCTCAAGATATAAGTTGAGTTCAGAAGCATACTCATGAGCTCCTTAACCTTTCTTCTTCTCTCTGTTGCTCCTGCCATGTGCTGTCTCTGAGTTCAAACTCTACAGTTAAGATGTCCAGTAACAATGCAACAGCTTTGGAGATTCCAATTCTAAGCTACTGTAAAGTTAAGGTACGCGGTGCAGTATGCTTGGAGCTTCATAGACTCATTGATAGAATTTCGCATGTAATTTTAGCCATCGAATCTGCTCGACCAAATAGTACGTTAGCGGTGCAGGTGTTGTGCTCATTAAACTTCACTTTGGCTAAAGCCAAGTCAGTTATCAGACATTGTTCCAAGTGCAGTAAACTCTACCTGGCAATCACATCGCACAAGATACTTTCAAGATGTCAAAAAGTAAGAAATGCATTTGAATTTTATTTGGCTCAGATTCAAAATGCGGTTCAAACTCCATTGGCTGATGAGATATCTGCAATACTACATGACCTTAGGGATACAGAATTTTCCCTGGAATTTGCAGAAGACGAGGCTAGGAAAGTACTACTTTCACTGCTTGAGAAGAATTTTCCAGATGCAGCTTCTATACAAAAGGAAGAACTTGAAGCTATTCAAATTGCAACTTCTAGATTGGAGATCAAATCCCCGTTTTCTCTCTTAGTAGAGAAAGCAACCCTTAAGAAGCAACTTGAAGAAGTCAGTGAAAAAAACCTAAAGGAGAAGGAGCTTCTACAATACCTTTTGTATCTCTTGGTCAAACATGGGAAATCCATTTGTCAGTTTCAAAATGGAAGCCACTCCCCGAAACATGAATGTCATGACCAGTCCTTTGAGAATGAGTTGGTTGTGGATGAATCAAGTCAATCACTCTCTTAAACCAAAAGTTGGAGATTTATGATTGTTTAGCACTTGAGGTTGTTTTGTTCGTACTATATTACTGTCTAGTGTCCACAGAAGGTGATTTGTGACTTAAAACAAACATTTCTATTTTATTCATTTGATAGGACCCCGAATTTTTTTATTTTTTTTTAGCATAGGACCTGGACACCCTCTATCTCAATGTGTATATAAAGGAAAAAAATATATAAAACGTAGAATCTAATCAAATCAATTTTATTTAATAAAATC

Coding sequences of Glyma17g36960

Limit To All Plant Sequences

>Glyma17g36960.1   sequence type=CDS   gene model=Glyma17g36960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAGTAACAATGCAACAGCTTTGGAGATTCCAATTCTAAGCTACTGTAAAGTTAAGGTACGCGGTGCAGTATGCTTGGAGCTTCATAGACTCATTGATAGAATTTCGCATGTAATTTTAGCCATCGAATCTGCTCGACCAAATAGTACGTTAGCGGTGCAGGTGTTGTGCTCATTAAACTTCACTTTGGCTAAAGCCAAGTCAGTTATCAGACATTGTTCCAAGTGCAGTAAACTCTACCTGGCAATCACATCGCACAAGATACTTTCAAGATGTCAAAAAGTAAGAAATGCATTTGAATTTTATTTGGCTCAGATTCAAAATGCGGTTCAAACTCCATTGGCTGATGAGATATCTGCAATACTACATGACCTTAGGGATACAGAATTTTCCCTGGAATTTGCAGAAGACGAGGCTAGGAAAGTACTACTTTCACTGCTTGAGAAGAATTTTCCAGATGCAGCTTCTATACAAAAGGAAGAACTTGAAGCTATTCAAATTGCAACTTCTAGATTGGAGATCAAATCCCCGTTTTCTCTCTTAGTAGAGAAAGCAACCCTTAAGAAGCAACTTGAAGAAGTCAGTGAAAAAAACCTAAAGGAGAAGGAGCTTCTACAATACCTTTTGTATCTCTTGGTCAAACATGGGAAATCCATTTGTCAGTTTCAAAATGGAAGCCACTCCCCGAAACATGAATGTCATGACCAGTCCTTTGAGAATGAGTTGGTTGTGGATGAATCAAGTCAATCACTCTCTTAA

>Glyma17g36960.2   sequence type=CDS   gene model=Glyma17g36960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAGTAACAATGCAACAGCTTTGGAGATTCCAATTCTAAGCTACTGTAAAGTTAAGGTACGCGGTGCAGTATGCTTGGAGCTTCATAGACTCATTGATAGAATTTCGCATGTAATTTTAGCCATCGAATCTGCTCGACCAAATAGTACGTTAGCGGTGCAGGTGTTGTGCTCATTAAACTTCACTTTGGCTAAAGCCAAGTCAGTTATCAGACATTGTTCCAAGTGCAGTAAACTCTACCTGGCAATCACATCGCACAAGATACTTTCAAGATGTCAAAAAGTAAGAAATGCATTTGAATTTTATTTGGCTCAGATTCAAAATGCGGTTCAAACTCCATTGGCTGATGAGATATCTGCAATACTACATGACCTTAGGGATACAGAATTTTCCCTGGAATTTGCAGAAGACGAGGCTAGGAAAGTACTACTTTCACTGCTTGAGAAGAATTTTCCAGATGCAGCTTCTATACAAAAGGAAGAACTTGAAGCTATTCAAATTGCAACTTCTAGATTGGAGATCAAATCCCCGTTTTCTCTCTTAGTAGAGAAAGCAACCCTTAAGAAGCAACTTGAAGAAGTCAGTGAAAAAAACCTAAAGGAGAAGGAGCTTCTACAATACCTTTTGTATCTCTTGGTCAAACATGGGAAATCCATTTGTCAGTTTCAAAATGGAAGCCACTCCCCGAAACATGAATGTCATGACCAGTCCTTTGAGAATGAGTTGGTTGTGGATGAATCAAGTCAATCACTCTCTTAA

Predicted protein sequences of Glyma17g36960

Limit To All Plant Sequences

>Glyma17g36960.1   sequence type=predicted peptide   gene model=Glyma17g36960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSNNATALEIPILSYCKVKVRGAVCLELHRLIDRISHVILAIESARPNSTLAVQVLCSLNFTLAKAKSVIRHCSKCSKLYLAITSHKILSRCQKVRNAFEFYLAQIQNAVQTPLADEISAILHDLRDTEFSLEFAEDEARKVLLSLLEKNFPDAASIQKEELEAIQIATSRLEIKSPFSLLVEKATLKKQLEEVSEKNLKEKELLQYLLYLLVKHGKSICQFQNGSHSPKHECHDQSFENELVVDESSQSLS*

>Glyma17g36960.2   sequence type=predicted peptide   gene model=Glyma17g36960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSNNATALEIPILSYCKVKVRGAVCLELHRLIDRISHVILAIESARPNSTLAVQVLCSLNFTLAKAKSVIRHCSKCSKLYLAITSHKILSRCQKVRNAFEFYLAQIQNAVQTPLADEISAILHDLRDTEFSLEFAEDEARKVLLSLLEKNFPDAASIQKEELEAIQIATSRLEIKSPFSLLVEKATLKKQLEEVSEKNLKEKELLQYLLYLLVKHGKSICQFQNGSHSPKHECHDQSFENELVVDESSQSLS*

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